Translational Medicine Research Collaboration

Takes two files of nodes and build pair-lists of all possible combination of list-1 in the first column and list-2 in the second.
 

Converts an adjacency matrix to a pair-list - two nodes with the numerical value associated with the relationship.
 

Takes the "up" and "down" files, from "R_discretize_vass",
which are converted to a discretized gene-sample matrix.
 

Takes a list of genes or probesets and convert to a pair-list of all possible combinations. 
This can then be compared to an observed pair-list, from the output of
"make_pair_graph_from_matrix", using "compare_pair_graphs".
 

Compares two pair-lists

         - output is common pairs from two pair-lists, with the associated numerical values.